Open Science Contact List

by Walter Jessen on Sunday, May 16, 2010 | No comments

Graham Steel (FriendFeed: McDawg) has started a contact list for people who are directly or indirectly affiliated and/or associated with Open Science. He discussed the reason for an Open Science Contact List yesterday on his blog. Although his focus in on the Life Sciences, people from other disciplines are also welcome. If you’re such an individual, add you name to the list.

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Networked Science and StackExchange

by Walter Jessen on Friday, May 14, 2010 | 4 comments

StackExchange

I first discovered Biostar, a StackExchange for bioinformatics, computational genomics and systems biology, via a post of Deepak’s (FriendFeed: mndoci) back in March: BioStar – A bioinformatics stackexchange. I’ve been meaning to use it, but with the job change and move, I just haven’t had time. It’s similar to the Life Scientists room on FriendFeed, although obviously more focused on Q & A.

Part Digg, part forum, part blog and part wiki, StackExchange is a place to get expert answers to your questions. Today, I stumbled across Meta StackExchange, a forum to ask questions about StackExchange itself. Scanning down the page, I saw the question “Proposal for Physical Computing StackExchange” and thought to myself, “Oh, that’s interesting, you can create smaller, more focused groups.”

Little did I know … those focused groups are called “Stacks” and there’s a number of them, several of which revolve around science.

Just yesterday, Andrew Perry (FriendFeed: pansapiens) wrote about StackExchange Sites for Science. He briefly reviewed a couple of them and linked to a list of science-related StackExchanges. I was interested in the Neuroknowledge stack until I saw all the spam. Hopefully, Stack Exchange 2.0 with it’s new site creation process and Creative Commons licensing will address the problem.

Scientific research today no longer happens in a vacuum. Networking technologies and online resources such as StackExchange are helping to increase the pace of scientific communication, scholarship and progress in the digital age. It’s truly an exciting time for networked science.

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FriendFeed Science Focus: Week #13, 2010

by FriendFeed Sciencebot on Tuesday, March 30, 2010 | 1 comment


The NGS FriendFeed Sciencebot posts weekly updates on interesting science posts from FriendFeed, including the Life Scientists and Science 2.0 rooms.
“Jaw-dropping” verdict against Myriad in BRCA patent case
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FriendFeed Science Focus: Week #12, 2010

by FriendFeed Sciencebot on Tuesday, March 23, 2010 | 2 comments


The NGS FriendFeed Sciencebot posts weekly updates on interesting science posts from FriendFeed, including the Life Scientists and Science 2.0 rooms.
Hi, all. I am delighted to announce that we have finally officially launched ResearchRaven http://www.researchraven.com/ It is designed to save researchers time and effort in finding calls for papers for conferences and journals and announcements of meetings. It is a little light on some categories so far and I am still populating it.
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FriendFeed Science Focus: Week #11, 2010

by FriendFeed Sciencebot on Tuesday, March 16, 2010 | 5 comments


The NGS FriendFeed Sciencebot posts weekly updates on interesting science posts from FriendFeed, including the Life Scientists and Science 2.0 rooms.
Brain cancer stem cells are no match for killer T cells

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FriendFeed Science Focus: Week #10, 2010

by FriendFeed Sciencebot on Wednesday, March 10, 2010 | 1 comment


The NGS FriendFeed Sciencebot posts weekly updates on interesting science posts from FriendFeed, including the Life Scientists and Science 2.0 rooms.
#Bioinformatics Blog Carnival no. 1 is up
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FriendFeed Science Focus: Week #09, 2010

by FriendFeed Sciencebot on Sunday, March 7, 2010 | 2 comments


The NGS FriendFeed Sciencebot posts weekly updates on interesting science posts from FriendFeed, including the Life Scientists and Science 2.0 rooms.
I must be pinging the GEO database too much because I’m getting connection refused errors via BioPython’s Entrez parser.


FF fee survey (http://friendfeed.com/the-life-scientists/18cd2460/in-wake-of-facebook-buyout-and-recent-outage) update.

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FriendFeed Science Focus: Week #08, 2010

by FriendFeed Sciencebot on Saturday, February 27, 2010 | 1 comment


The NGS FriendFeed Sciencebot posts weekly updates on interesting science posts from FriendFeed, including the Life Scientists and Science 2.0 rooms.
In the wake of the Facebook buyout and the recent outage and the Buzz debacle and so on, lots of folks are considering exit strategies. I’m wondering whether we could fund a user-owned version, probably based on Tornado. Would you pay for FriendFeed? If so, how much/year? Survey here: http://www.surveymonkey.com/s/5HX98RY.


Find myself considering FriendFeed exit strategies. Not a knee-jerk response to the outage; the day will come, we should be prepared. Ideas?
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The Panton Principles for Open Data in Science

by Walter Jessen on Friday, February 19, 2010 | 1 comment

The Panton Principles for Open Data in Science and the Is It Open Data? web service launched today.

From the Panton Principles preamble:

Science is based on building on, reusing and openly criticising the published body of scientific knowledge.

For science to effectively function, and for society to reap the full benefits from scientific endeavours, it is crucial that science data be made open.

By open data in science we mean that it is freely available on the public internet permitting any user to download, copy, analyse, re-process, pass them to software or use them for any other purpose without financial, legal, or technical barriers other than those inseparable from gaining access to the internet itself. To this end data related to published science should be explicitly placed in the public domain.

The Panton Principles were authored by Peter Murray-Rust, Cameron Neylon, Rufus Pollock and John Wilbanks at the Panton Arms on Panton Street in Cambridge, UK – with input from the Working Group on Open Data in Science.

You can review and endorse the principles at http://www.pantonprinciples.org

The Is It Open Data? web service allows anyone to make and publicly record an enquiry into the openness of a scientific dataset.

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FriendFeed Science Focus: Week #07, 2010

by FriendFeed Sciencebot on Friday, February 19, 2010 | 1 comment


The NGS FriendFeed Sciencebot posts weekly updates on interesting science posts from FriendFeed, including the Life Scientists and Science 2.0 rooms.
Bioinformatics blog carnival – http://bytesizebio.net/index.php/2010/02/18/bioinformatics-blog-carnival/


Friendfeed for Research? First impressions of ScienceFeed
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